{ "_id": "6a1ea665b25058d4daad89ec", "Package": "matrixcut", "Version": "0.0.1", "Date": "2023-03-19", "Title": "Determines Clustering Threshold Based on Similarity Values", "Authors@R": "person(\"Matthew\", \"Cserhati\", email = \"csmatyi@protonmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-3673-9152\"))", "Maintainer": "Matthew Cserhati ", "Description": "The user must supply a matrix filled with similarity\nvalues. The software will search for significant differences\nbetween similarity values at different hierarchical levels. The\nalgorithm will return a Loess-smoothed plot of the similarity\nvalues along with the inflection point, if there are any. There\nis the option to search for an inflection point within a\nspecified range. The package also has a function that will\nreturn the matrix components at a specified cutoff. References:\nMullner. ; Cserhati, Carter. (2020, Journal of\nCreation 34(3):41-50),\n.", "License": "GPL (>= 3)", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.2.3", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-02 09:43:46 UTC", "User": "root" }, "Author": "Matthew Cserhati [aut, cre]\n()", "Config/pak/sysreqs": "libglpk-dev libxml2-dev", "Repository": "https://csmatyi.r-universe.dev", "Date/Publication": "2023-03-24 15:30:02 UTC", "RemoteUrl": "https://github.com/cran/matrixcut", "RemoteRef": "HEAD", "RemoteSha": "166ead04638609c26eceee528a359f79a32fad06", "MD5sum": "9fcccfa2bfd2471241c09535afcaa389", "_user": "csmatyi", "_type": "src", "_file": "matrixcut_0.0.1.tar.gz", "_fileid": "44cc3834c7e42c6b5e6a7f7e63c1227dd4329583a927fa1cae967d9ae0f8a224", "_filesize": 133966, "_sha256": "44cc3834c7e42c6b5e6a7f7e63c1227dd4329583a927fa1cae967d9ae0f8a224", "_created": "2026-06-02T09:43:46.000Z", "_published": "2026-06-02T09:46:13.570Z", "_distro": "noble", "_jobs": [ { "job": 79043316515, "time": 102, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7354340399" }, { "job": 79043316457, "time": 111, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7354343383" }, { "job": 79043316547, "time": 70, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7354328277" }, { "job": 79043316465, "time": 81, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7354332173" }, { "job": 79042942085, "time": 126, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7354299729" }, { "job": 79043316517, "time": 100, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7354339046" }, { "job": 79043316485, "time": 59, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7354324326" }, { "job": 79043316441, "time": 62, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7354324752" }, { "job": 79043316551, "time": 60, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7354324356" } ], "_buildurl": "https://github.com/r-universe/csmatyi/actions/runs/26811636567", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/matrixcut", "_commit": { "id": "166ead04638609c26eceee528a359f79a32fad06", "author": "Matthew Cserhati ", "committer": "cran-robot ", "message": "version 0.0.1\n", "time": 1679671802 }, "_maintainer": { "name": "Matthew Cserhati", "email": "csmatyi@protonmail.com", "login": "csmatyi", "description": "bioinformatics researcher for 23 years. Led team that assembled the whole genome sequence of Neanderthal and Denisovan", "uuid": 5377989, "orcid": "0000-0002-3673-9152" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "igraph", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "inflection", "role": "Imports" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "csmatyi", "count": 1, "uuid": 5377989 } ], "_userbio": { "uuid": 5377989, "type": "user", "name": "Matthew Cserhati", "description": "bioinformatics researcher for 23 years. 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KHK-2014", "Lilium speciosum var. gloriosoides", "Lilium sulphureum", "Lilium superbum", "Lilium taliense", "Lilium tsingtauense", "Lilium washingtonianum", "Lloydia tibetica", "Luzuriaga radicans", "Medeola virginiana", "Notholirion bulbuliferum", "Notholirion campanulatum", "Notholirion thomsonianum", "Paris axialis", "Paris bashanensis", "Paris birmanica", "Paris caobangensis", "Paris cronquistii", "Paris daliensis", "Paris delavayi", "Paris dulongensis", "Daiswa dunniana", "Daiswa forrestii", "Paris forrestii", "Paris incompleta", "Paris japonica", "Paris liiana", "Paris luquanensis", "Paris mairei", "Paris marmorata", "Paris polyphylla", "Daiswa chinensis", "Paris polyphylla var. emeiensis", "Daiswa yunnanensis", "Paris qiliangiana", "Paris quadrifolia", "Paris rugosa", "Paris sp. CG-2021b", "Paris tengchongensis", "Paris tetraphylla", "Paris thibetica", "Paris undulata", "Paris vaniotii", "Paris vietnamensis", "Paris xichouensis", "Paris yanchii", "Prosartes lanuginosa", "Scoliopus bigelovii", "Smilax glabra", "Smilax goeringii", "Smilax microphylla", "Smilax moranensis", "Smilax riparia", "Smilax weniae", "Tricyrtis formosana", "Tricyrtis macropoda", "Trillium camschatcense", "Trillium govanianum", "Tulipa altaica", "Tulipa buhseana", "Tulipa gesneriana", "Tulipa iliensis", "Tulipa patens", "Tulipa schrenkii", "Tulipa sinkiangensis", "Tulipa thianschanica", "Veratrum dahuricum", "Veratrum grandiflorum", "Veratrum japonicum", "Veratrum maackii", "Veratrum mengtzeanum", "Veratrum nanchuanense", "Veratrum nigrum", "Veratrum oblongum", "Veratrum oxysepalum", "Veratrum patulum", "Veratrum schindleri", "Veratrum stenophyllum", "Veratrum taliense", "Xerophyllum tenax", "Ypsilandra thibetica", "Ypsilandra yunnanensis", "Stemona japonica", "Stemona parviflora", "Stemona sessilifolia", "Stemona tuberosa" ], "rows": 163, "table": true, "tojson": true }, { "name": "primates", "title": "Mitochondrial genome sequence similarity matrix for 31 primate species", "object": "primates", "class": [ "matrix", "array" ], "fields": [ "Gorilla gorilla gorilla", "Gorilla gorilla", "Pan paniscus", "Pan troglodytes", "Homo sapiens", "Homo sapiens neanderthalensis", "Homo heidelbergensis", "Homo sp. 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